INsPeCT

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ChIP-seq
Gene-list Analysis
Microarray
RMaNI
RNA-seq
WGCNA

RNA-seq

Analysis name:

Please eneter a short name for your analysis

Data file:

Please upload a file containing processed data. File must be in a csv format with headers. Format - first row=ids then columns=samples.

Sample annotation file:

Please upload a sample annotation file. File must be in csv format with column headers. First column must contain sample names as in the data file and second column must be the conditions (like normal/cancer etc). Headers must be samples and condition.

Differential gene expression analysis

Perform differential gene expression gene expression analysis

Differential gene expression analysis:

Analizis options

Functional enrichmnent analysis using DAVID

Druggability analysis using CancerResource

Functional annotation of genes using gProfileR

Functional annotation of genes using EDanalysis

Gene Enrichment Disequilibrium Analysis using EDanalysis for BP

Gene Enrichment Disequilibrium Analysis using EDanalysis for MF

Gene Enrichment Disequilibrium Analysis using EDanalysis for CC

Promoter analysis

Select the upstream region:

Select the downstream region:

Extract the promoter sequences for the input genes

Detect CpG islands in the promoter sequences of the input genes

Remove sequences with over GC content in the promoter sequences of the input genes. (>55% GC content for human)

Submit the input genes to MEME Suite of tools for Motif Discovery, Motif Comparison and Motif Enrichment Analysis

Perform TFBS over-representation analysis using oPOSSUM

INsPeCT

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RNA-seq