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ChIP-seq
Gene-list Analysis
Microarray
RMaNI
RNA-seq
WGCNA
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RMaNI
Analysis Name:
*
Please enter a name for your analysis. It will be used in all the results file names.
Data Import
Data file:
Please upload data file in csv format. Header is must.
Patient sample annotation file:
Please upload patient sample annotation file. Sample names in the data file and in this file must be matching.
Control Condition:
*
Please enter control condition in your dataset. This name must match one of the condition in sample annotation file. e.g Normal.
Select chip type:
hgu133a
hgu133a2
hgu133b
hgu133plus2
hgu219
hgu95a
hgu95av2
hgu95b
hgu95c
hgu95d
hgu95e
hthgu133a
hthgu133b
Select number of genes:
1000
2000
3000
Please select the number of genes for input to RMaNI. RMaNI will automatically select this many genes from the input dataset. For selection of genes, it uses differential expression of genes between “ctrlcondition” and all other conditions in the dataset. For this purpose, it uses lowest BH adjusted p-value as the selection criteria. Your processed data must contain all the probes in the dataset.