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ChIP-seq
Gene-list Analysis
Microarray
RMaNI
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ChIP-seq
Gene-list Analysis
Microarray
RMaNI
RNA-seq
WGCNA
Home
Gene-list Analysis
Analysis name:
Please enter a short name for your analysis
Genelist file:
Upload gene list (Entrez IDs) file. File must be in csv format without header. Note - Gene ids must be Entrez
Analysis options
Functional enrichmnent analysis using DAVID
Druggability analysis using CancerResource
Functional annotation of genes using gProfileR
Functional annotation of genes using EDanalysis
Gene Enrichment Disequilibrium Analysis using EDanalysis for BP
Gene Enrichment Disequilibrium Analysis using EDanalysis for MF
Gene Enrichment Disequilibrium Analysis using EDanalysis for CC
Promoter analysis
Select the upstream region:
500
1000
2000
5000
Select the downstream region:
50
100
200
Extract the promoter sequences for the input genes
Detect CpG islands in the promoter sequences of the input genes
Remove sequences with over GC content in the promoter sequences of the input genes. (>55% GC content for human)
Submit the input genes to MEME Suite of tools for Motif Discovery, Motif Comparison and Motif Enrichment Analysis
Perform TFBS over-representation analysis using oPOSSUM